#!/usr/bin/env perl

system("touch test_iva_qc.stats.txt");
system("touch test_iva_qc.assembly_contigs_hit_ref.fasta");
system("touch test_iva_qc.assembly_vs_ref.coords");
system("touch test_iva_qc.assembly_v_ref.act.sh");
system("touch test_iva_qc.assembly_v_ref.blastn");
system("touch test_iva_qc.contig_placement.R");
system("touch test_iva_qc.reads_mapped_to_assembly.bam");
system("touch test_iva_qc.reads_mapped_to_assembly.bam.bai");
system("touch test_iva_qc.reads_mapped_to_assembly.bam.flagstat");
system("touch test_iva_qc.reads_mapped_to_ref.bam");
system("touch test_iva_qc.reads_mapped_to_ref.bam.bai");
system("touch test_iva_qc.reads_mapped_to_ref.bam.flagstat");   
system("mkdir test_iva_qc.gage");

    
